Skeleton Generation


The cell label data structure is transformed into binary skeletons for every frame. A skeleton depicts the boundaries between cells with a white 1 pixel line (255) over black background (0). File format is PNG.

Selective Plane Projection


The segmentation module needs to be run before this module


Parameter: Use Polygonal Mask

  • Allows to crop the skeletons before saving them by applying the polygonal mask created beforehand.
  • Additional requirement: polygonal mask module

Parameter: Use Corrected Segmentation

  • Allows to use the corrected segmentation results instead of the first segmentation results.
  • Additional requirement: Tracking & Re-Segmentation Module

Do you think these informations are not enough to help you? Drop a line to the author and he will extend this tutorial asap!
This page was written by Davide Heller on 10.09.14@17.08