The cell label data structure is transformed into binary skeletons for every frame. A skeleton depicts the boundaries between cells with a white 1 pixel line (255) over black background (0). File format is PNG.
The segmentation module needs to be run before this module
Parameter: Use Polygonal Mask
- Allows to crop the skeletons before saving them by applying the polygonal mask created beforehand.
- Additional requirement: polygonal mask module
Parameter: Use Corrected Segmentation
- Allows to use the corrected segmentation results instead of the first segmentation results.
- Additional requirement: Tracking & Re-Segmentation Module