Step-by-Step guide to export skeletons from multiple ROIs


Summary

Starting from the beta release 2.1.13-NightBuilds-75 you can export skeletons of different ROIs taken on the image you processed with EpiTools.


How-to

  1. Execute Polygon mask (ROI) [1]

    a. Define the 1st cropping area

    a. A new tag will appear in the default pool

  2. Execute Polygon mask (ROI) [2]

    a. Specify the [comparative mode] execution

    a. A new pool will appear in the list of available pools

    b. Define the 2nd cropping area

    a. A new tag will appear in the new pool

  3. Exporting image skeletons using the 1st polygon mask:

    1. Select “Generate skeletons” from the analysis menu

    2. The program will ask to move back to the default poll, click [Ok]

    3. Select “Use Polygon crop” from the popup window

    4. Your skeletons will be exported in the analysis folder under the [skeletons] subfolder

  4. Exporting image skeletons using the 2nd polygon mask:

    1. Click on [Manage active pools] from the toolbar Export an ovlerlay

    2. Select the second temporary pool from the list of available pool.

    3. Select “Generate skeletons” from the analysis menu

    4. The program will ask in which modality you want to execute the action, select [overwrite module]

    5. The program will ask to move back to the default poll, answer [No]

    6. Select “Use Polygon crop” from the popup window

    7. Your skeletons will be exported in the analysis folder in the [skeleton_current.timestamp] subfolder


Do you think these informations are not enough to help you? Drop a line to the author and he will extend this tutorial asap!
This page was written by Lorenzo Gatti on 10.04.16@11:45